
Antibiotics are typically dosed at levels above the minimum inhibitory concentrationThe lowest concentration of an antimicrobial that will inhibit the visible growth of a microorganism after overnight incubation. Dosing at well below the MIC improves the MP's effectiveness against slow-growing chronic pathogens and reduces the likelihood of resistance. (MIC) so as to reduce the likelihood of bacterial resistance. While the MIC may be relevant for acute infections, dosing at that level can still suppress the immune response and aid the growth of chronic infections including those implicated in chronic inflammatory disease. For instance, some antibiotics, when administered at high dosages, have been widely recognized as being able to inhibit various functions of phagocytes.1 These effects seem to be independent of their antibacterial effect.2
The Marshall Protocol uses subinhibitory dosage levels of antibiotics. Dosing at well below the MIC improves the MP's effectiveness against chronic pathogens and further reduces the likelihood of bacterial resistance. Pulsed dosing greatly reduces the incidence of biofilm persister cells.3 The presence of a sustained immunopathological response is evidence that the MP uses antibiotics in such a way that it does not suppress the immune system.
Certain antibiotics are immunosuppressive in dose-dependent fashion. For instance, the tetracycline antibiotics have been widely recognized as being able to inhibit various functions of phagocytes, the white blood cells that engulf and kill bacteria.4 These effects seem to be independent of their antibacterial effect.5
These immunosuppressive properties decrease the amount of L-formDifficult-to-culture bacteria that lack a cell wall and are not detectable by traditional culturing processes. Sometimes referred to as cell wall deficient bacteria. and biofilm bacteria killed by the immune system. This is why some people report feeling better on high-dose antibiotics. The high levels of antibiotic prevents the immune system from killing these forms of bacteria, resulting in a temporary decrease in the toxins the pathogens release as they die and the inflammatory cytokinesAny of various protein molecules secreted by cells of the immune system that serve to regulate the immune system. produced by the immune system. However, in reality, the person’s L-form bacteriaDifficult-to-culture bacteria that lack a cell wall and are not detectable by traditional culturing processes. Sometimes referred to as cell wall deficient bacteria. remain alive and find it easier to spread to new tissues and organs.

The most effective way to avoid suppressing one's immune system is to use low doses of pulsed antibiotics – even at doses below the minimum inhibitory concentration for an antibiotic.
Pulsed dosing refers to administering a dose periodically, such as every 48 hours, rather than once or several times daily. When given in this manner, the immunosuppressive effects of the antibiotics are minimized but their ability to weaken bacterial ribosomes remains intact. Patients gradually increase the dosage of the pulsed antibiotic, so that species of bacteria that are susceptible to all different concentration levels will eventually be targeted.
A bioengineer led team at the University of Washington recently created an antibiotic-containing polymer that releases antibiotic slowly onto the surface of hospital devices, such as catheters and prostheses, to reduce the risk of biofilm-related infections. According to the study's author:
Rather than massively dosing the patient with high levels of released antibiotic, this strategy allows the release of extremely low levels of this very potent antibiotic over long periods of time. We calculated the amount released at the surface that would kill 100% of the bacteria entering the surface zone…. Bacteria that live through antibiotic dosing can go on to produce resistant strains. If 100% of the bacteria approaching the surface are killed, they can’t produce resistant offspring. The classical physician approach, dosing the patient systemically and heavily to rid the patient of persistent bacteria, can lead to those resistant strains. Our approach releases miniscule doses compared to what a physician would use, but releases the antibiotic where it will be optimally effective and least likely to leave antibiotic-resistant survivors.
Buddy Ratner, PhD, Director of the Engineered Biomaterials Program at the University of Washington
Although taken orally, the MP antibiotics are taken in the same manner as those administered by Ratner and team. Because they too are dosed at optimal times in extremely small doses, the chance that long-term antibiotic use might foster resistant bacteria is again, essentially negligible, especially when multiple antibiotics are typically used.
Studies have shown that the MP's bacteriostatic antibiotics - all but one of the MP antibiotics are bacteriostatic - are effective when given in pulsed low doses. Several studies have shown that even when administered in low, pulsed doses, the bacteriostatic antibiotics are still able to decrease the production of bacterial exoproteins.6
Although the mainstream medical community is rapidly acknowledging the large number of diseases and infections caused by biofilms, most researchers are convinced that biofilms are difficult or impossible to destroy, particularly those cells that form the deeper layers of a thick biofilm. Most papers on biofilms state that they are resistant to antibiotics administered in a standard manner. The practice of using pulsed low dosingAdministration of an antibiotic periodically such as every 48 hours and in amounts small enough that the immunosuppressive effects of the antibiotics are minimized. of antibiotics seems to be particularly effective at targeting biofilm bacteria and is supported by both in vivoA type of scientific study that analyzes an organism in its natural living environment. and in silicoExperiment technique performed on computer or via computer emulation. research.
Some researchers claim that antibiotics cannot penetrate the matrix that surrounds a biofilm. But research by Dr. Kim Lewis of Tulane University and other scientists has confirmed that the inability of antibiotics to penetrate the biofilm matrix is much more of an exception than a rule. According to Lewis, “In most cases involving small antimicrobial molecules, the barrier of the polysaccharide matrix should only postpone the death of cells rather than afford useful protection.”
In a paper entitled “The Riddle of Biofilm Resistance,” 9 Lewis discusses her laboratory-based observations of how pulsed, low dose antibiotics are able to break up biofilm, while antibiotics administered in a standard manner (high, constant doses) cannot. According to Lewis, the use of pulsed, low-dose antibiotics to target biofilm bacteria is supported by observations she and her colleagues have made in the laboratory.
Using computer modeling software, another team of researchers have modeled the action of antibiotics on bacterial biofilms and found that pulsing antibiotics can be a superior way of targeting treatment resistant biofilm bacteria. According to Cogan et al, “Exposing a biofilm to low concentration doses of an antimicrobial agent for longer time is more effective than short time dosing with high antimicrobial agent concentration.” 10
After antibiotics penetrate a biofilm, a number of cells called “persisters” are left behind. Persisters are simply cells that are able to survive the first onslaught of antibiotics, and if left unchecked, gradually allow the biofilm to form again. According to Lewis, persister cells form with particular ease in immunocompromised patients because the immune system is unable to help the antibiotic “mop up” all the biofilm cells it has targeted. Paradoxically, dosing an antibiotic in a constant, high-dose manner (in which the antibiotic is always present) helps persisters persevere.11
Conversely, in the case of low, pulsed dosing, the survival of persisters is not enhanced. Pulsed low dosing causes the persister cells to lose their phenotype (their shape and biochemical properties), meaning that they are unable to switch back into biofilm mode. A second application of the antibiotic should then completely eliminate the persister cells, which are still in planktonic or free-floating mode.
“It is entirely possible that successful cases of antimicrobial therapy of biofilm infections result from a fortuitous optimal cycling [pulsed dosing] of an antibiotic concentration that eliminated first the bulk of the biofilm and then the progeny of the persisters that began to divide,” states Lewis.